Gigwa

This extension module for Drupal does not include Gigwa engine. It only provides
an easy way to include Gigwa interface into an existing Drupal site.

The Gigwa application, which stands for "Genotype Investigator for Genome-Wide
Analyses", provides an easy and intuitive way to explore large amounts of
genotyping data by filtering it not only on the basis of variant features,
including functional annotations, but also matching genotype patterns. It is a
fairly lightweight, web-based, platform-independent solution that may be
deployed on a workstation or as a data portal. It allows to feed a MongoDB
database with VCF, PLINK or HapMap files containing up to tens of billions of
genotypes, and provides a user-friendly interface to filter data in real time.
Gigwa provides the means to export filtered data into several popular formats
and features connectivity not only with online genomic tools, but also with
standalone software such as FlapJack or IGV. Additionnally, Gigwa-hosted
datasets are interoperable via two standard REST APIs: GA4GH and BrAPI.

Project homepage: http://southgreen.fr/content/gigwa
GitHub: https://github.com/SouthGreenPlatform/Gigwa2
Publication: Sempéré G, Philippe F, Dereeper A, Ruiz M, Sarah G, Larmande P.
Gigwa-Genotype investigator for genome-wide analyses. Gigascience. 2016;5:25.

Drupal 10: version 2.0.x is for Drupal 8+. It's currently at development stage but already functional. It requires some style adjustments and some discussion has been started with the Gigwa team to integrate changes that would make a better Gigwa integration into an iframe (possibly in next Gigwa release or the one after).